Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut. Olm, M. R., Spencer, S. P., Takeuchi, T., Silva, E. L., Sonnenburg, J. L Nature microbiology, 2025
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes Carterm M.M., Olm, M. R., Merrill, B. D., Dahan, D., Tripathi, Spencer, S. S., et al. Cell, 2023
Pursuing Human-Relevant Gut Microbiota-Immune Interactions. Spencer, S. P., Fragiadakis, G. K., Sonnenburg, J. L. Immunity, 2019
Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes. Guthrie, L., Spencer, S. P., Perelman, D., Van Treuren, W., Han, S., Yu, F. B., Sonnenburg, E. D., Fischbach, M. A., Meyer, T. W., Sonnenburg, J. L. Cell host & microbe, 2022